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I use matplotlib.pyplot to generate plots. When you show the plots in my Spyder or Jupyter Notebook IDEs and save them by clicking, the default format is .png. However, in scientific publications, we use vector images to make sure they work well when embedded in text (i.e. the dots and captions do not blur when zooming in and zooming out).
Um vier berühmte Persönlichkeiten zu ehren, die einst in Wien lebten—Ludwig Boltzmann, Ludwig van Beethoven, Elisabeth Amalie Eugenie, und Franz Schubert—enthält dieser Artikel vier Paragraphen aus ihren Schriften.
The content of this post is closely linked to the research conducted by A. Hilfinger, J. Paulsson, and J. Elf, etc. As a mathematical rookie, I will introduce the models and mathematics in the most accessible way. You need a second-year undergrad level of mathematics to read this.
I have been applied Gillespie algorithm for about three years to simulate stochastic chemical reactions, or more coarse-grained gene regulatory networks. I think it is a good point to check Gillespie’s important original papers and write a report about some of my thoughts…
The assignment of PHY2709 Quantitative Biology. It is a brief paper reading report of Ozbudak EM, Thattai M, Lim HN, Shraiman BI, Van Oudenaarden A. Multistability in the lactose utilization network of Escherichia coli. Nature. 2004 Feb 19;427(6976):737-40. doi: 10.1038/nature02298. PMID: 14973486.
In this course, we compute in C++, a compiled language, since we need fast computing, or we cannot get our degree until death. We also use unix-like environment to run our jobs on high performance clusters (HPC).
The final project of PHY2018 Stochastic Processes. Thanks for Prof Anton Zilman’s valuable comments and I tried to improve this post according them. For an introduction of kinesin from a biological view, check the Chinese post 细胞生物学.
《大学化学》是一门鸡肋的水课，学了将近两个月的配位化学，只是觉得崩溃，对于有机物的介绍也停留在给老年人科普的科学水平，需要记忆的枯燥知识点远比带来的知识体系提升更多。
For me, the computer rookie, in order to take advantage of different packages in python, I mis-operated my computer and broke it, and finally had to reinstalled the operating system. Here I recorded the procedures of configuring coding tool from a system-reinstalled computer as a manual. I currently use Windows 10, the process applies to Windows although I may soon switch to Mac.
Config files for my GitHub profile.