I started an interesting new category - supplementary mathematics of supplementary information of selected papers, abbr. as “Supp-of-Supp”. I am writing down page-after-page detailed but non-trivial mathematical derivations for the non-intuitive equation that suddenly appears and kills me when reading the papers, which are closely related to my research topics and similar crucial mathematical skills.
I love this course offered by Prof Xiao-Peng Zhang the Kuang Ya Ming Honors School at NJU. The course were delivered in Chinese but all the lecture slides are in English. I also finished my course thesis in English. This great course leaded us to understand research papers in this field by teaching us crucial math involved.
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I use matplotlib.pyplot to generate plots. When you show the plots in my Spyder or Jupyter Notebook IDEs and save them by clicking, the default format is .png. However, in scientific publications, we use vector images to make sure they work well when embedded in text (i.e. the dots and captions do not blur when zooming in and zooming out).
Um vier berühmte Persönlichkeiten zu ehren, die einst in Wien lebten—Ludwig Boltzmann, Ludwig van Beethoven, Elisabeth Amalie Eugenie, und Franz Schubert—enthält dieser Artikel vier Paragraphen aus ihren Schriften.
The content of this post is closely linked to the research conducted by A. Hilfinger, J. Paulsson, and J. Elf, etc. As a mathematical rookie, I will introduce the models and mathematics in the most accessible way. You need a second-year undergrad level of mathematics to read this.
I have applied the Gillespie algorithm for about three years to simulate stochastic chemical reactions or more coarse-grained gene regulatory networks. I think it is a good point to check Gillespie’s important original papers and write a report about some of my thoughts…
The assignment of PHY2709 Quantitative Biology. It is a brief paper reading report of Ozbudak EM, Thattai M, Lim HN, Shraiman BI, Van Oudenaarden A. Multistability in the lactose utilization network of Escherichia coli. Nature. 2004 Feb 19;427(6976):737-40. doi: 10.1038/nature02298. PMID: 14973486.
In this course, we compute in C++, a compiled language, since we need fast computing, or we cannot get our degree until death. We also use unix-like environment to run our jobs on high performance clusters (HPC).
The final project of PHY2018 Stochastic Processes. Thanks for Prof Anton Zilman’s valuable comments and I tried to improve this post according them. For an introduction of kinesin from a biological view, check the Chinese post 细胞生物学.
Config files for my GitHub profile.