Um zwei berühmte Persönlichkeiten zu ehren, die einst in Wien lebten—Ludwig Boltzmann und Ludwig van Beethoven—enthält dieser Artikel zwei Paragraphen aus ihren Schriften.
The content of this post is closely linked to the research conducted by A. Hilfinger, J. Paulsson, and J. Elf, etc. As a mathematical rookie, I will introduce the models and mathematics in the most accessible way. You need a second-year undergrad level of mathematics to read this.
I have been applied Gillespie algorithm for about three years to simulate stochastic chemical reactions, or more coarse-grained gene regulatory networks. I think it is a good point to check Gillespie’s important original papers and write a report about some of my thoughts…
The assignment of PHY2709 Quantitative Biology. It is a brief paper reading report of Ozbudak EM, Thattai M, Lim HN, Shraiman BI, Van Oudenaarden A. Multistability in the lactose utilization network of Escherichia coli. Nature. 2004 Feb 19;427(6976):737-40. doi: 10.1038/nature02298. PMID: 14973486.
In this course, we compute in C++, a compiled language, since we need fast computing, or we cannot get our degree until death. We also use unix-like environment to run our jobs on high performance clusters (HPC).
The final project of PHY2018 Stochastic Processes. Thanks for Prof Anton Zilman’s valuable comments and I tried to improve this post according them. For an introduction of kinesin from a biological view, check the Chinese post 细胞生物学.
《大学化学》是一门鸡肋的水课，学了将近两个月的配位化学，只是觉得崩溃，对于有机物的介绍也停留在给老年人科普的科学水平，需要记忆的枯燥知识点远比带来的知识体系提升更多。
For me, the computer rookie, in order to take advantage of different packages in python, I mis-operated my computer and broke it, and finally had to reinstalled the operating system. Here I recorded the procedures of configuring coding tool from a system-reinstalled computer as a manual. I currently use Windows 10, the process applies to Windows although I may soon switch to Mac.
This post covers several topics from PHY2707 and PHY2709 of UofT grad course. I will update whenever I need to teach or review the related materials.
Ludwig Boltzmann, who spent much of his life studying Statistical Mechanics, died in 1906, by his own hand. Paul Ehrenfest, carrying on the work, died similarly in 1933. Now it is our turn to study Statistical Mechanics. Perhaps it will be wise to approach the subject cautiously. –in States of Matter, by David. L. Goodstein, 1975, Dover N.Y.
Config files for my GitHub profile.
This repositary includes the abstract and the figures and their codes of my undergradute thesis. The full text is not included.
23-24 Biophysics